A Novel Method for Determining the Non-cds Region By Using Error-Correcting Codes

Authors : Elif Segah OZTAS, Merve BULUT YILGÖR

Pages : 219-230

Doi:10.30931/jetas.1192924

View : 11 | Download : 9

Publication Date : 2022-12-30

Article Type : Research Paper

Abstract :Our main motivation question is \`Is there any relation between the non-coding region and useless error-correcting codes?\`. Then we focused CDS and non-CDS areas instead of exon and intron, because CDS involves in process of synthesis a protein and is involved by exons. We get the data of the genes from NCBI [21]. In this study, we introduce the method Fi-noncds that is used for determining the non-CDS region by using error-correcting codes. We obtained that the error-correction codes that can\`t correct any codes named zero error-correcting code, placed in non-CDS areas, densely. This result shows that non-CDS regions insert ignore into journalissuearticles values(non-coding areas in DNA); match zero error-correcting codes insert ignore into journalissuearticles values(useless error-correcting code);. Frame lengths 7,8,9 and 10,11,12,13 and 14 were tested by the method. Optimal result for selected genes insert ignore into journalissuearticles values(TRAV1-1, TRAV1-2, TRAV2, TRAV7, WRKY33, HY5, GR-RBP2); is frame length 8, n=7, k=2, dnaNo=1. Moreover, optimal results of the algorithm Fi-noncds matched the best sequence length 8 as in [1].
Keywords : Fi noncds, non CDS, error correcting codes, zero error correcting codes